Amended color scheme and lazy plugins to be in a more proper format than my initial hack solution.,

files/system/etc/skel/.config/nvim/lua/plugins/colorscheme.lua

@@ -0,0 +1,17 @@
+return {
+    "folke/tokyonight.nvim",
+    lazy = false,
+    priority = 1000,
+    opts = {
+        style = "night",
+        on_highlights = function(h1)
+            h1.LineNrAbove = {
+                fg = "#6ab8ff",
+            }
+            h1.LineNrBelow = {
+                fg = "#ff6188"
+            }
+        end,
+        on_colors = function() end,
+    },
+}

files/system/etc/skel/.config/nvim/lua/plugins/init.lua

@@ -1,24 +0,0 @@
-return {
-	{
-		"LazyVim/LazyVim",
-		import = "lazyvim.plugins",
-		opts = {
-			colorscheme = function()
-				local tokyonight = require("tokyonight")
-				tokyonight.setup({
-					style = "night",
-					on_highlights = function(hl)
-						hl.LineNrAbove = {
-							fg = "#6ab8ff",
-						}
-						hl.LineNrBelow = {
-							fg = "#ff6188",
-						}
-					end,
-					on_colors = function() end,
-				})
-				tokyonight.load()
-			end,
-		},
-	},
-}